{{Infobox scientist
{{Infobox scientist
| name = Joaquim Roca
| name = Joaquim Roca
| image = File:Joaquim Roca 2020.jpg
| image = File:Joaquim Roca .jpg
| image_size =
| image_size =
| alt =
| alt =
| caption = Roca in 2020
| caption = Roca in
| birth_name = Joaquim Roca Bosch
| birth_name = Joaquim Roca Bosch
| birth_date = 1960
| birth_date = 1960
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Spanish scientist
Joaquim Roca is a Spanish biomedical scientist internationally renowned for his research on Chromosome DNA topology. He is a Professor at the Spanish National Research Council (CSIC)[1] and currently leads the DNA Topology Lab at the Institute of Molecular Biology of Barcelona (IBMB)[2][3].
Roca received his medical degree (MD) in 1984 from the University of Barcelona, his master degree (MS) in 1995 from the Polytechnic University of Catalonia, and his doctorate (PhD) in 1988 from the University of Barcelona.[4]
[5]
[6]. His doctoral thesis on DNA topoisomerase activities during the spermatogenesis received the University of Barcelona extraordinary award for doctoral studies [7] [8]
[9]
In 1988, after serving one year as Assistant professor of Physiology at the Faculty of Medicine in Barcelona[10], Roca moved to Harvard University to work as a Postdoctoral Fellow (1988-1991) and later as a Research Associate (1992-1995) in the laboratory of James C. Wang. In 1996, he obtained an academic tenure position at the Spanish National Research Council (CSIC)[11] and returned to Barcelona to establish the DNA Topology Laboratory at IBMB[12][13]. Roca was promoted to research Professor in 2008. He served as Chairman of the Department of Molecular and Cellular Biology (2002-2006), as Deputy Director of IBMB (2006-2010), and as Chairman of the Department of Structural and Molecular Biology (2023-2026) [14][15][16][17].
Research Contributions
[edit]
Roca’s work focuses on the nanomechanics of chromosome DNA topology, exploring how the twisting and coiling of DNA are regulated, and how these parameters determine the conformation and the three-dimensional path of DNA during genome activities. A main challenge in this field is the scarcity of specialists and the limited availability of technical approaches to assess the conformation of the DNA double helix within cells. Roca’s research has led to key discoveries and methodological advances
[18]
[19]
[20]
[21]
, including:


- The design of new methods for genome-wide mapping of the un-constrained topolome (DNA helical tension)[16][17] and the the constrained topolome (DNA deformations stabilised by chromatin elements).[18]
- ^ Roca, J.; Wang, J. C. (27 November 1992). “The capture of a DNA double helix by an ATP-dependent protein clamp: a key step in DNA transport by type II DNA topoisomerases”. Cell. 71 (5): 833–840. doi:10.1016/0092-8674(92)90558-t. ISSN 0092-8674. PMID 1330327.
- ^ Roca, J.; Wang, J. C. (20 May 1994). “DNA transport by a type II DNA topoisomerase: evidence in favor of a two-gate mechanism”. Cell. 77 (4): 609–616. doi:10.1016/0092-8674(94)90222-4. ISSN 0092-8674. PMID 8187179.
- ^ Roca, J. (April 1995). “The mechanisms of DNA topoisomerases”. Trends in Biochemical Sciences. 20 (4): 156–160. doi:10.1016/s0968-0004(00)88993-8. ISSN 0968-0004. PMID 7770916.
- ^ Arsuaga, Javier; Vázquez, Mariel; Trigueros, Sonia; Sumners, De Witt; Roca, Joaquim (16 April 2002). “Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids”. Proceedings of the National Academy of Sciences of the United States of America. 99 (8): 5373–5377. Bibcode:2002PNAS…99.5373A. doi:10.1073/pnas.032095099. ISSN 0027-8424. PMC 122776. PMID 11959991.
- ^ Trigueros, S.; Arsuaga, J.; Vazquez, M. E.; Sumners, D. W.; Roca, J. (1 July 2001). “Novel display of knotted DNA molecules by two-dimensional gel electrophoresis”. Nucleic Acids Research. 29 (13): E67–67. doi:10.1093/nar/29.13.e67. ISSN 1362-4962. PMC 55791. PMID 11433043.
- ^ Arsuaga, Javier; Vazquez, Mariel; McGuirk, Paul; Trigueros, Sonia; Sumners, De Witt; Roca, Joaquim (28 June 2005). “DNA knots reveal a chiral organization of DNA in phage capsids”. Proceedings of the National Academy of Sciences of the United States of America. 102 (26): 9165–9169. Bibcode:2005PNAS..102.9165A. doi:10.1073/pnas.0409323102. ISSN 0027-8424. PMC 1166588. PMID 15958528.
- ^ Valdés, Antonio; Martínez-García, Belén; Segura, Joana; Dyson, Sílvia; Díaz-Ingelmo, Ofelia; Roca, Joaquim (18 March 2019). “Quantitative disclosure of DNA knot chirality by high-resolution 2D-gel electrophoresis”. Nucleic Acids Research. 47 (5): e29. doi:10.1093/nar/gkz015. ISSN 1362-4962. PMC 6412111. PMID 30649468.
- ^ Roca, J.; Mezquita, C. (June 1989). “DNA topoisomerase II activity in nonreplicating, transcriptionally inactive, chicken late spermatids”. The EMBO Journal. 8 (6): 1855–1860. doi:10.1002/j.1460-2075.1989.tb03581.x. ISSN 0261-4189. PMC 401034. PMID 2548858.
- ^ Salceda, Javier; Fernández, Xavier; Roca, Joaquim (7 June 2006). “Topoisomerase II, not topoisomerase I, is the proficient relaxase of nucleosomal DNA”. The EMBO Journal. 25 (11): 2575–2583. doi:10.1038/sj.emboj.7601142. ISSN 0261-4189. PMC 1478187. PMID 16710299.
- ^ Fernández, Xavier; Díaz-Ingelmo, Ofelia; Martínez-García, Belén; Roca, Joaquim (1 July 2014). “Chromatin regulates DNA torsional energy via topoisomerase II-mediated relaxation of positive supercoils”. The EMBO Journal. 33 (13): 1492–1501. doi:10.15252/embj.201488091. ISSN 1460-2075. PMC 4194091. PMID 24859967.
- ^ Valdés, Antonio; Segura, Joana; Dyson, Sílvia; Martínez-García, Belén; Roca, Joaquim (25 January 2018). “DNA knots occur in intracellular chromatin”. Nucleic Acids Research. 46 (2): 650–660. doi:10.1093/nar/gkx1137. ISSN 1362-4962. PMC 5778459. PMID 29149297.
- ^ Valdés, Antonio; Coronel, Lucia; Martínez-García, Belén; Segura, Joana; Dyson, Sílvia; Díaz-Ingelmo, Ofelia; Micheletti, Cristian; Roca, Joaquim (26 July 2019). “Transcriptional supercoiling boosts topoisomerase II-mediated knotting of intracellular DNA”. Nucleic Acids Research. 47 (13): 6946–6955. doi:10.1093/nar/gkz491. ISSN 1362-4962. PMC 6649788. PMID 31165864.
- ^ Dyson, Sílvia; Segura, Joana; Martínez-García, Belén; Valdés, Antonio; Roca, Joaquim (4 January 2021). “Condensin minimizes topoisomerase II-mediated entanglements of DNA in vivo”. The EMBO Journal. 40 (1): e105393. doi:10.15252/embj.2020105393. ISSN 1460-2075. PMC 7780148. PMID 33155682.
{{cite journal}}: CS1 maint: article number as page number (link) - ^ Segura, Joana; Joshi, Ricky S.; Díaz-Ingelmo, Ofelia; Valdés, Antonio; Dyson, Silvia; Martínez-García, Belén; Roca, Joaquim (28 September 2018). “Intracellular nucleosomes constrain a DNA linking number difference of -1.26 that reconciles the Lk paradox”. Nature Communications. 9 (1): 3989. Bibcode:2018NatCo…9.3989S. doi:10.1038/s41467-018-06547-w. ISSN 2041-1723. PMC 6162219. PMID 30266901.
- ^ Dyson, Sílvia; Segura, Joana; Martínez-García, Belén; Valdés, Antonio; Roca, Joaquim (4 January 2021). “Condensin minimizes topoisomerase II-mediated entanglements of DNA in vivo”. The EMBO Journal. 40 (1): e105393. doi:10.15252/embj.2020105393. PMC 7780148. PMID 33155682.
{{cite journal}}: CS1 maint: article number as page number (link) - ^ Bermúdez, Ignacio; García-Martínez, José; Pérez-Ortín, José E.; Roca, Joaquim (October 2010). “A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding”. Nucleic Acids Research. 38 (19): e182. doi:10.1093/nar/gkq687. ISSN 1362-4962. PMC 2965259. PMID 20685815.
- ^ Joshi, Ricky S.; Piña, Benjamin; Roca, Joaquim (17 February 2010). “Positional dependence of transcriptional inhibition by DNA torsional stress in yeast chromosomes”. The EMBO Journal. 29 (4): 740–748. doi:10.1038/emboj.2009.391. ISSN 1460-2075. PMC 2805846. PMID 20057354.
- ^ Segura, Joana; Díaz-Ingelmo, Ofelia; Martínez-García, Belén; Ayats-Fraile, Alba; Nikolaou, Christoforos; Roca, Joaquim (28 May 2024). “Nucleosomal DNA has topological memory”. Nature Communications. 15 (1): 4526. Bibcode:2024NatCo..15.4526S. doi:10.1038/s41467-024-49023-4. ISSN 2041-1723. PMC 11133463. PMID 38806488.




